Department of Plant Pathology
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Linda L. Kinkel
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Epidemiology and Ecology of Plant Diseases

Research in my laboratory is focused on the ecology of plant-associated micro-organisms, especially antibiotic-producing bacteria, in native prairie and in agricultural soils. Antibiotics are hypothesized to confer a selective advantage to the producer when competition is important to microbial fitness. Antibiotic-producing microbes can also have significant negative effects on soil-borne plant pathogens, and can enhance plant fitness. Our work is directed to identifying factors that influence the frequency and intensity of such activities within the soil-borne streptomycete community. We have recently quantified the genetic and phenotypic diversity of antibiotic-producing streptomycetes in native prairie soils, and in prairie soils that have been subjected to enrichments in nitrogen or atmospheric CO2.me. In native prairie soils, we have also been evaluating the hypothesis that some plant species actively enrich the indigenous antibiotic-producing bacteria as a means of protecting themselves from soil-borne plant pathogens (protective mutualism). In addition, using both experimental and modeling work, we have been studying the co-evolutionary dynamics of inhibition and resistance among soil-borne microbes, and the influences of genetic relatedness, spatial proximity, and nutrient utilization on the probability of inhibition among streptomycetes. In agricultural soils, we have been using green manures to alter the naturally-occurring soil-borne microbial populations in an effort to enhance indigenous pathogen inhibitory activity. Using this approach, we have been successful in significantly reducing multiple soil-borne diseases, including Phytophthora root rot on alfalfa, and Verticillium wilt and scab on potato. Finally, recent work has also considered inoculative strategies for controlling soil-borne plant pathogens.

Selected Publications:

Shigenobu, Y., Kinkel, L. L., Shinohara, H., Numajiri, N., Hiradate, S., Koitabashi, M., Suyama, K., Negishi, H., and Tsushima, S.  2006.  Production of quorum-sensing-related signal molecules by epiphytic bacteria inhabiting wheat heads.  Canadian Journal of Microbiology 52: 411-418. 

Lee, S. D., Kinkel, L. L., and Samac, D. A.  2006.  Amycolatopsis minnesotensis sp. nov., isolated from a prairie soil.  International Journal of Systematic and Evolutionary Microbiology 56:265-269.

Barnes, C. W., Kinkel, L. L, and Groth, J. V.  2005.  Spatial and temporal dynamics of Puccinia andropogonis on Comandra umbellata and Andropogon gerardii in a native prairie.  Canadian Journal of Botany 83:1159-1173. 

Wiggins, E., and Kinkel, L. L.  2005.  Green manures and crop sequences influence alfalfa root rot and pathogen inhibitory activity among soil-borne streptomycetes.  Plant and Soil 268:271-283. 

Davelos, A. L., Xiao, K., Samac, D. A. et al.  2004.  Spatial variation in Streptomyces genetic composition and diversity in a prairie soil.  Microbial Ecology 48:602-612. 

Wiggins, B. E., and Kinkel, L. L.  2005.  Green manures and crop sequences influence potato diseases and pathogen inhibitory activity of indigenous streptomycetes.  Phytopathology 95:178-185.

Ryan, A. D., Kinkel, L. L., and Schottel, J. L.  2004.  Effect of pathogen isolate, potato cultivar, and antagonist strain on potato scab severity and biological control.  Biocontrol Science and Technology 14:301-311

Davelos, A. L., Xiao, K., Flor, J. M., and Kinkel, L. L.   2004.  Genetic and phenotypic traits of streptomycetes used to characterize antibiotic activities of field-collected microbes.  Canadian Journal of Microbiology 50:79-89.

Davelos, A. L., Kinkel, L. L., and Samac, D. A.  2004.  Spatial variation in the frequency and intensity of antibiotic interactions among streptomycetes from prairie soil.  Applied and Environmental Microbiology 70:1051-1058.

Stromberg, K. D., Kinkel, L. L., and Leonard, K. J.  2004.  Quantifying the effect of bacterial antagonists on the relationship between phyllosphere population sizes of Xanthomonas translucens pv. translucens and subsequent bacterial leaf streak severity on wheat seedlings.  Biological Control 29:58-65. 

Samac, D. A., Willert, A. M., McBride, M. J., and Kinkel, L. L.  2003.  Effect of antibiotic-producing Streptomyces on nodulation and leaf spot in alfalfa.  Applied Soil Ecology 22:55-66. 

Kinkel, L. L., Newton, M. R., and Leonard, K. J.  2002.  Resource Aggregation in the Phyllosphere:  Implications for Microbial Dynamics Across Spatial Scales.  IN Lindow et al., eds.  "Phyllosphere Microbiology".  APS Press, Saint Paul, MN. 

Morris, C. E. and Kinkel, L. L.  2002.  Fifty Years of Phyllosphere Microbiology:  Significant Contributions to Research in Related Fields.  IN Lindow et al., eds.  "Phyllosphere Microbiology".  APS Press, Saint Paul, MN. 

Beale, J. W., Windels, C. E., and Kinkel, L. L.  2002.  Spatial distribution of Aphanomyces cochlioides and root rot in sugar beet fields.  Plant Disease 86:547-551.