Publications

Department of Plant Pathology
Peer Reviewed Publications - 2013

Al-Nemer LM, Seetan RK, Bassi FM, Chitaranjan C, Helsene A, Loree P, Gosh SB, Gu YQ, Luo MC, Iqbal MJ, Lazo GR, Denton AM and Kianian SF. 2013. Wheat Zapper: a flexible online tool for colinearity studies in plants Functional & Integrative Genomics 13 (1): 11-17

Andolfo, G., Sanseverino, W., Rombauts, S., Van der Peer, Y., Bradeen, J.M., Carputo, D., Frusciante, L., and Ercolano, M.R. 2013. Overview of tomato candidate pathogen recognition genes reveals important Solanum R locus dynamics. New Phytologist 197:223-237.

Bakker, M. G., Bradeen, J. M., and Kinkel, L. l.  2013.  Effects of plant host species and plant community richness on streptomycete community structure.  FEMS Microbiology Ecology 83:596-506. 

Bakker, M. G., Otto-Hanson, L., Lange, A. J., Bradeen, J. M., and Kinkel, L. L.  2013.  Plant monocultures produce more antagonistic soil Streptomyces communities than high-diversity plant communities.  Soil Biology and Biochemistry 65:304-312. 

Bakker, M. G., Schlatter, D. S., Otto-Hanson, L., and Kinkel, L. L.  2013.  Diffuse symbioses: Roles of plant-plant, plant-microbe, and microbe-microbe interactions in structuring the soil microbiome.  Molecular Ecology:  DOI: 10.1111/mec.12571.

Bao, Y., Chen, S. Y., Vetsch, J., and Randall, G. Soybean yield and Heterodera glycines responses to liquid swine manure in nematode suppressive soil and conducive soil. Journal of Nematology (2013) 45:21-29.

Bassi F, Kumar A, Zhang Q, Paux E, Huttner E, Kilian A, Rhoderissa D, Feuillet C, Xu S, and Kianian SF. 2013. Radiation hybrid QTL mapping of Tdes2 involved in the first meiotic division of wheat. 2013. Theor. Appl. Genet. 126: 1977-1990

Bernardo, A. N., R. L. Bowden, M. N. Rouse, M. S. Newcomb, D. S. Marshall, and G. Bai. 2013. Validation of molecular markers for new stem rust resistance genes in U.S. hard winter wheat. Crop Science 53:755-764.

Bonhomme M, André O, Badis Y, Ronfort J, Burgarella C, Chantret N, Prosperi J-M, Briskine R, Mudge J, Debéllé F, Navier H, Miteul H, Hajri A, Baranger A, Tiffin P, Dumas B, Pilet-Navel M-L, Young ND, Jacquet C (2014) High density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance Aphanomyces euteiches. New Phytologist: 201(4): doi: 10.1111/nph.12611.

Borer, E. T.,Kinkel, L. L., May, G., and Seabloom, E.W.   2013. The world within: quantifying the determinants and outcomes of a host's microbiome.  Basic and Applied Ecology 14:533-539.

Bruce, M., Neugebauer, K. A., Joly, D. L., Migeon, P., Cuomo, C. A., Wang, S., W., Akhunov, E., Bakkeren, G., Kolmer, J. A., Fellers, J. P. Using transcription of six Puccinia triticina races to identify the effective secretome during infection of wheat. Frontiers in Plant Science 4: article 520. DOI: 10: 3389/fpls. 2013.00520.

Carlson, G. R., Berg, J. E., Kephart, K. D., Wichman, D. M., Lamb, P. F., Mill, J. H., Stougaard, R. N., Eckhoff, J. L., Riveland, N. R., Nash, D. L., Grey, W. E., Jin, Y., Kolmer, J. A., Chen, X., Bai, G., and Bruckner, P. L.  2013. Registration of Judee wheat.  J. of Plant Registrations 7: 191-194.

Carlson, G.R., J.E. Berg, R.N. Stougaard, J.L. Eckhoff, P.F. Lamb, K.D. Kephart, D.M. Wichman, J.H. Miller, N.R. Riveland, D.L. Nash, W.E. Grey, Y. Jin, J.A. Kolmer, X. Chen, G. Bai, and P.L. Bruckner. 2013. Registration of 'Bearpaw' Wheat. J. Plant Registrations 7:180-183.

Carlson, G.R., J.E. Berg, K.D. Kephart, D.M. Wichman, P.F. Lamb, J.H. Miller, R.N. Stougaard, J.L. Eckhoff, N.R. Riveland, D.L. Nash, W.E. Grey, Y. Jin, J.A. Kolmer, X. Chen, G. Bai, and P.L. Bruckner. 2013. Registration of 'Judee' Wheat. J. Plant Registrations 7:191-194.

Chen, S., Kurle, J. E., Sun, M., Naeve, S., Wyse, D. L., and Stahl, L. A. Preceding crops affected soybean iron-deficiency chlorosis and vesicular-arbuscular mycorrhizal fungi in soybean cyst nematode-infested fields. Crop Science (2013) 53:250-259. doi: 10.2135/cropsci2012.03.0170.

Condon, B. J., Leng, Y., Wu, D., Bushley, K. E., Ohm, R. A., Otillar, R., Martin, J., Schackwitz, W., Grimwood, J., MohdZainudin, N., Xue, C., Wang, R., Tu, Z. J., Steffenson, B. J., Salamov, A., Sun, H., Lowry, S., LaButti, K., Han, J., Copeland, A., Lindquist, E., Lucas, S., Barry, K., Schmutz, J., Baker, S., Grigoriev, I. V., Zhong, S., and Turgeon, B. G. Comparative genome structure, secondary metabolite and effector coding capacity across Cochliobolus pathogens. PLoS Genetics 2013. 9: e1003233. doi:10.1371/journal.pgen.1003233.

Fellers, J. P., Soltani, B. M., Bruce, M., Linning, R., Cuomo, C. A., Szabo, L. J. and Bakkeren, G. BMC Genomics 14:60-72. 2013.

Gao, L., Tu, Z.J., Millett, B.P., and Bradeen, J.M. 2013. Insights into organ-specific pathogen defense responses in plants: RNA-seq analysis of potato tuber-Phytophthora infestans interactions BMC Genomics 14:340.

Geiser, D.M., Aoki, T., Bacon, C.W., Baker, S.E., Bhattacharayya, M.B., Brandt, M., Burgess, L.W., Chulze, S., Coleman, J.J., Correll, J.C., Covert, S.F., Crous, P.W., Cuomo, C.A., de Hoog, G.S., Di Pietro, A., Elmer, W.H., Epstein, L., Frandsen, R.J.N., Freeman, S., Gagkaeva, T., Glenn, A.E., Gordon, T.R., Gregory, N.F., Hammond-Kosack, K.E., Hanson, L.E., Jimenez-Gasco, M.D., Kang, S., Kistler, H.C., Kuldau, G.A., Leslie, J.F., Logrieco, A., Lu, G., Lysoe, E., Ma, L., McCormick, S.P., Migheli, Q., Moretti, A., Munaut, F., O'Donnell, K., Pfenning, L.H., Ploetz, R.C., Proctor, R.H., Rehner, S.A., Robert, V.A.R.G., Rooney, A.P., Salleh, B., Scandiani, M.M., Scauflaire, J., Short, D.P.G., Steenkamp, E.T., Suga, H., Summerell, B.A., Sutton, D.A., Thrane, U., Trail, F., van Diepeningen, A., VanEtten, H.D., Viljoen, A., Waalwijk, C., Ward, T.J., Wingfield, M.J., Xu, J., Yang, X., Yli-Mattila, T., Zhang, N., 2013. Letter to the editor: One fungus, one name: Defining the genus Fusarium in a scientifically robust way that preserves longstanding use. Phytopathology 103:400-408.

German, S. E. and Kolmer, J.A. 2013. Leaf rust resistance in selected Uruguayan late maturity common wheat cultivars. Euphytica: 195:57-67.

Ghavami F, Soltani A, Kianian PMA, and Kianian SF. 2013. Mitochondria in plant physiology. In: Pessarakli M (ed.) Handbook of plant and crop physiology, Expanded third Edition. CRC Press. Part II. Chapter 11 pp 227-258 (in press)

Glover, K.D., J.C. Rudd, R.N. Devkota, R.G. Hall, Y. Jin, L.E. Osborne, J.A. Ingemansen, E.B. Turnipseed, J.R. Rickertsen, and G. A. Hareland. 2013. Registration of 'Forefront' wheat. J. Plant Registrations 7:184-190.

Graybosch, R. A., Baenziger, P. S., Santra, D. K., Regassa, T., Jin, Y., Kolmer, J., Wegulo, S., Bai, G., St. Amand, P., Chen, X., Seabourn, B., Dowell, F., Bowden, R., and Marshall, D. M. 2014. Registration of 'Mattern waxy (amylose-free) winter wheat. J. of Plant Registrations 8: 43-48.

Guaragna, M. A., J. Lamborn, D. Groth-Helms, S. Juszczak, D. Mollov, B. Lockhart, T. van Schadewijk, J. Hammond, and R. Jordan. 2013. First Report of Nerine yellow stripe virus in Amaryllis in the United States. Plant Disease 97:1389.

Hellmann, L., W. Tegel, Ó. Eggertsson, F. H. Schweingruber, R. A. Blanchette, A. Kirdyanov, H. Gärtner, and U. Büntgen. 2013. Tracing the origin of Arctic driftwood, Journal of Geophysical Research: Biogeosciences 118: 68–76.

Huang, Y., Millet, B. P., Beaubien, K. A., Dahl, S. K., Steffenson, B. J., Smith, K. P., and Muehlbauer, G. J. Haplotype diversity and population structure in cultivated and wild barley evaluated for Fusarium head blight responses.Theor. Appl. Genet. 2013. 126:619-636.DOI 10.1007/s00122-012-2006-4.

Hunger, R. W., Edwards, J. T., Bowden, R. L., Yan, L., Rayas-Duarte, P., Bai, G., Horn, G. W., Kolmer, J. A., Giles, K., Chen, M. S., Jin. Y., Osburn, R. D., Bales, M. B., Seabourn, B. W., Klatt, A. R. and Carver, B. F. 2014. 'Billings' wheat combines early maturity, disease resistance, and desirable grain quality for the southern Great Plains, USA. J. of Plant Registrations 8: 22-31.

Impulitti, A.E., and Malvick, D.K. 2013. Fungal endophyte diversity in soybean. J. Appl. Microbiol. 114:1500-1506.

Jonkers, W., Xayamongkhon, H., Haas, M., Olivain, C., van der Does, H.C., Broz, K., Rep, M., Alabouvette, C., Steinberg, C. and Kistler, H.C. 2013. EBR1 genomic expansion and its role in virulence of Fusarium species. Environmental Microbiology (In press).

Juzwik, J., Park, J-H., Banik, M.T., and Haugen, L. 2013. Biotic agents responsible for rapid crown decline and mortality of hickory in northeastern and north central USA. Pp. 152-168. In: Proceedings of the18th Central Hardwoods Forest Conference. G.W. Miller, T.M. Schuler, K.W. Gottschalk, J.R. Brooks, S.T. Gruschecky, B.D. Spong, and J.S. Rentch (eds.). Gen. Tech. Rep. NRS-P-117. New Town Square, PA; USDA Forest Service.

Kaffenberger, Justin T., and Jonathan S. Schilling. Using a grass substrate to compare decay among two clades of brown rot fungi. Applied microbiology and biotechnology 97, no. 19 (2013): 8831-8840.

Kinkel, L. L., Schlatter, D. S., Xiao, K., and Baines, A. D.  2013 (14?).  Sympatric inhibition and niche differentiation suggest alternative coevolutionary trajectories among Streptomycetes.  ISME:  accepted and in press.  doi:10.1038/ismej.2013.175  Note this is available electronically in 2013, but I think the hard copy comes out in 2014

Kistler, H.C., Rep, M. and Ma, L.-J. 2013. Structural dynamics of Fusarium genomes In: Fusarium: genomics, molecular and cellular biology. Eds. Brown, D.W. and Proctor, R.H., Caister Academic Press, Norwich, United Kingdom. 

Kõljalg, U., Nilsson, H., Abarenkov, K., Tedersoo, L., Taylor, A., Bahram, M., Bates, S.T., Bruns, T., Bengtsson-Palme, J., O'Callaghan, T., Douglas, B., Drenkhan, T., Eberhardt, U., Duenas, M., Grebenc, T., Griffith, G., Hartmann, M., Kirk, P., Kohout, P., Larsson, E., Lindahl, B., Lücking, R., Martín, M., Matheny, B., Nguyen, N., Niskanen, T., Oja, J., Peay, K., Peintner, U., Peterson, M., Põldmaa, K., Saag, L., Saar, I., Schüßler, A., Scott, J., Senés, C., Smith, M., Suija, A., Taylor, L.D., Telleria, M., Weiss, M., and Larsson, K-H. Towards a unified paradigm for sequence-based identification of Fungi. Molecular Ecology (2013) 22: 5271–5277.

Kolmer, J. A. and Hughes, M. E.  2013.  Physiologic specialization of Puccinia triticina on wheat in the United States in 2011.  Plant Dis. 97: 1103-1108.

Kumar A, Bassi FM, de Jimenez, MM, Ghavami F, Mazaheri M, Simons,K, Iqbal MJ, Mergoum M, Kianian S, and Kianian PMA.  2013.Radiation Hybrids: A valuable tool for Genetic, genomic and functional analysis of plant genomes. pp. 285-318  In: Genomics of plant genetic resources. Eds. R. Tuberosa, A. Graner and E. Frison. Springer publishing.

Kumar, A, Elias EM, Ghavami F, Xu X, Jain S, Manthey FA, Mergoum M, Alamri MS, Kianian PMA, Kianian SF. 2013. A Major QTL for Gluten Strength in Durum Wheat (Triticum turgidum L. var. durum). Cereal Sci. 57: 21-29

Letta, T., P. Olivera, M. Maccaferri, Y. Jin, K. Ammar, A. Badebo, J. Crossa, E. Noli, and R. Tubersoa.  2013. Genome-wide search of stem rust resistance loci at the seedling stage in durum wheat. Theor. Appl. Genet. (in press)

Liu, M, Szabo, L. J., Hambleton, S., Anikster, Y. and Kolmer, J. A. 2013. Molecular phylogenetic relationships of the brown leaf rust fungi on wheat, rye, and other grasses. Plant Dis. 97: 1408-1417.

Liu, M., Rodrigue, N., Kolmer, J. 2013. Population divergence in the wheat leaf rust fungus is correlated with wheat evolution. Published online www.nature.com/heredity doi:10.1038/hdy.2013.123

Liu, W., T. V. Danilova, M. N. Rouse, R. L. Bowden, B. Friebe, B. S. Gill, and M. O. Pumphrey. 2013. Development and characterization of a compensating wheat-Thinopyrum intermedium Robertsonian translocation with Sr44 resistance to stem rust (Ug99). Theoretical and Applied Genetics 126:1167-1177.

Luo MC, Gu YQ, You F, Deal K, Ma Y, Hu Y, Huo N , Wang Y, Wang J, Chen S, Jorgensen CM, Yong Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie R, Kianian SF, Martis MM, Mayer KFX, Sehgal SK, Gill BS, Bevan MW, Dolezel J, Lazo GR, Anderson OD, Dvorak J.  2013. A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. PNAS 110 (19): 7940-7945

Machado-Caballero, J. E., B. E. Lockhart, S. L. Mason, D. Mollov, and J. A. Smith. 2013. Identification, transmission, and partial characterization of a previously undescribed Flexivirus causing a mosaic disease of ash (Fraxinus spp.) in the USA. Plant Health Progress. doi:10.1094/PHP-2013-0509-01-RS.

Mago, R., D. Verlin, P. Zhang, U. Bansal, H. Bariana, Y. Jin, J. Ellis, S. Hoxha, I. Dundas. 2013.  Development of wheat-Aegilops speltoides recombinants and simple PCR-based markers for stem rust resistance genes on the 2S#1 chromosome Theor. Appl. Genet. (in press)

McCouch, S., Baute, G., Bradeen, J., Bramel, P., Bretting, P., Buckler, E., Burke, J., Charest, D., Cloutier, S., Cole, G., Dempewolf, H., Dingkuhn, M., Feuillet, C., Gepts, P., Grattapaglia, D., Guarino, L., Jackson, S., Knapp, S., Langridge, P., Lawton-Rauh, A., Lijua, Q., Lusty, C., Michael, T., Myles, S., Naito, K., Nelson, R., Pontarollo, R., Richards, C., Rieseberg, L., Ross-Ibarra, J., Rounsley, S., Hamilton, R., Schurr, U., Stein, N., Tomooka, N., van der Knaap, E., van Tassel, D., Toll, J., Valls, J., Varshney, R., Ward, J., Waugh, R., Wenzl, P., and Zamir, D. 2013. Feeding the future. Nature 499:23-24.

Menke, J., Weber, J., Broz, K. and Kistler, H.C. 2013. Cellular development associated with induced mycotoxin synthesis in the filamentous fungus Fusarium graminearum.  PLoS ONE 8(5): e63077.

Mergoum M, Harilal VE, Simsek S, Alamri MS, Schatz BG, Kianian SF, Elias E, Kumar A, and Bassi FM. 2013. Agronomic and quality QTL mapping in spring wheat. J. of Plant Breeding and Genetics 1: 19-33

Mergoum M, Harilal VE, Singh PK, Adhikari TB, Kumar A, Ghavami F, Elias E, Alamri MS, Kianian SF. 2013. Genetic analysis and mapping of seedling resistance to Septoria tritici blotch in 'Steele-ND'/'ND 735' bread wheat population. Cereal Res. Com. 41: 199-210.

Michalak de Jimenez M, Bassi F, Ghavami F, Simons K, Dizon R, Seetan RI, Al-Nemer LM, Denon AM, Dogramaci M, Simkova H, Dolezel J, Seth K, Luo MC, Dvorak J, Gu YQ, and Kianian SF. 2013. A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus.  Functional & Integrative Genomics 13 (1): 19-32

Mollov, D., B. Lockhart, D. C. Zlesak, and N. Olszewski. 2013. Complete nucleotide sequence of Rose yellow vein virus, a member of the family Caulimoviridae having a novel genome organization. Archives of Virology 158:877-880.

Mollov, D., B. Lockhart, D. C. Zlesak. 2013. Complete nucleotide sequence of Rosa rugosa leaf distortion virus, a new member of the family Tombusviridae. Archives of Virology. 158:2617-2620.

Mollov, D., B. Lockhart, D. C. Zlesak. 2013. Complete nucleotide sequence of Rose yellow mosaic virus, a novel member of the family Potyviridae. Archives of Virology. 158:1917-1923.

Mollov, D., B. Lockhart, E. Saalau-Rojas, C. Rosen. 2013. First report of a 16SrI (Aster Yellows) Group Phytoplasma on garlic (Allium sativum) in the USA. Plant Disease. First look. On line September 18.

Nallu, S., Silverstein, K. A. T., Samac, D. A., Bucciarelli, B., Vance, C. P., and VandenBosch, K. A. 2013. Regulatory patterns of a large family of defensin-like genes expressed in nodules of Medicago truncatula. PLoS ONE 8(4):e60355.

Neher, D.A., Weicht, T.R., Bates, S.T., Leff, J.W., and Fierer, N. Changes in bacterial and fungal communities across compost recipes, preparation methods, and composting times. PlosONE (2013) 8: e79512.

Newcomb, M., M. Acevedo, H.E. Bockelman, G. Brown-Guedira, B.J. Goates, E.W. Jackson, Y. Jin, P. Njau, M. Rouse, D. Singh, R. Wanyera, and J.M. Bonman.  2013. Field resistance to the Ug99 race group of the stem rust pathogen in spring wheat landrace. Plant Dis. 97:882-890.

Niks, R. E., van Heyzen, S., Szabo, L. J. and Alemu, S. K. Host status of barley to Puccinia coronata from couch grass and P. striiformis from wheat and brome. 2013. Eur J. Plant Pathol. 136:393-405. 2013.

Niu, Z., K.D. Puri, S. Chao, Y. Jin, B. Steffenson, S. Xu, and S. Zhong. 2013. Genetic analysis and molecular mapping of crown rust resistance in common wheat.  Theor. Appl. Genet. (in press)

Olivera, P. D., Kilian, A., Wenzl, P., and Steffenson, B. J. Development of a genetic linkage map for Sharon goatgrass (Aegilops sharonensis) and mapping of a leaf rust resistance gene. Genome 2013. 56:367-376. doi: 10.1139/gen-2013-0065.

Olson, E. L., M. N. Rouse, M. O. Pumphrey, R. L. Bowden, B. S. Gill, and J. A. Poland. 2013. Simultaneous transfer, introgression, and genomic localization of genes for resistance to stem rust race TTKSK (Ug99) from Aegilops tauschii to wheat. Theoretical and Applied Genetics 126:1179-1188.

Olson, E. L., M. N. Rouse, M. O. Pumphrey, R. L. Bowden, B. S. Gill, J. A. Poland. 2013. Introgression of stem rust resistance genes SrTA10187 and SrTA10171 from Aegilops tauschii to wheat. Theoretical and Applied Genetics 126:2477-2484.

Ortiz, R., J. Navarrete, C. Oviedo, M. Párraga, I. Carrasco, E. de la Vega, M. Ortiz, R. A. Blanchette. 2013. White rot Basidiomycetes isolated from Chiloé National Park in Los Lagos region, Chile. Antonie van Leeuwenhoek 104:1193-1203.

Otto-Hanson, L. K., Grabau, Z., Rosen, C., Salomon, C. E., and Kinkel, L. L.  2013.  Pathogen variation and urea influence selection and success of Streptomyces mixtures in biological control.  Phytopathology 103:34-42. 

Paape T, Bataillon T, Zhou P, Kono T, Briskine R, Young ND, Tiffin P (2013) Selection, genome wide fitness effects, and evolutionary rates in the model legume Medicago truncatula. Molecular Ecology 22(13): 3525-3538. doi: 10.1111/mec.12329.

Park, J-H., Juzwik, J., and Cavender-Bares, J. 2013. Multiple Ceratocystis smalleyi infections associated with reduced stem water transport in bitternut hickory. Phytopathology 103:565-574.

Perez, C. A., M. J. Wingfield, N. Altier and R. A. Blanchette. 2013. Species of Mycosphaerellaceae and Teratosphaeriaceae on native Myrtaceae in Uruguay: evidence of fungal host jumps. Fungal Biology 117:94-102.

Reed, S., English, J., Juzwik, J., and Ginzel, M. 2013. Bark and ambrosia beetles and their associated fungi colonizing stressed walnut in Missouri and Indiana. Walnut Council Bulletin 40(2):17-19.

Rosenzweig, N., Bradeen, J. M., Tu, Z. J., McKay, S. J., and Kinkel, L. L.  2013.  Rhizosphere bacterial communities associated with long-lived perennial prairie plants vary in diversity, composition, and structure.  Canadian Journal of Microbiology 59:494-502. 

Rouse, M. N., C. A. Griffey, and W. S. Brooks. 2013. First detection of Puccinia hordei virulence to barley leaf rust resistance gene Rph3 and combination with virulence to Rph7 in North America. Plant Disease 97:838.

Rudd, J.C., R.N. Devkota, J.A. Baker, A.M. Ibrahim, D. Worrall, M.D. Lazar, R. Sutton, L.W. Rooney, L.R. Nelson, B. Bean, R. Duncan, B.W. Seabourn, R.L. Bowden, Y. Jin and R.A. Graybosch. 2013. Registration of "TAM113" wheat. J. Plant Registrations 7:63-68.

Saintenac, C., W. Zhang, A. Salcedo, M. N. Rouse, H. N. Trick, E. Akhunov, and J. Dubcovsky. 2013. Identification of wheat gene Sr35 that confers resistance to Ug99 stem rust race group. Science 341:783-786.

Samac, D. A., Halfman, B., Jensen, B., Brietenbach, F., Behnken, L., Willbur, J., Undersander, D., Blonde, G., and Lamb, JF.S. 2013. Evaluating Headline fungicide on alfalfa production and sensitivity of pathogens to pyraclostrobin. Plant Health Prog. doi:10.1094/PHP-2013-0917-01-RS.

Samac, D. A., Lamb, J. F. S., Kinkel, L. L., and Hanson, L.  2013.  Effect of wheel traffic and green manure treatments on forage yield and crown rot in alfalfa (Medicago sativa).  Plant Soil 372:349-359.  DOI 10.1007/s11104-013-1746-5

Samac, D. A., Lamb, J. F. S., Kinkel, L. L., and Hanson, L. 2013. Effect of wheel traffic and green manure treatments on forage yield and crown rot in alfalfa (Medicago sativa). Plant Soil 372:349-359.

Schilling, J. S., S. M. Duncan, G. N. Presley, T. R. Filey, J. A. Jurgens and R. A. Blanchette. 2013. Colocalizing incipient reactions in wood degraded by the brown rot fungus Postia placenta. International Biodeterioration and Biodegradation 83: 56-62.

Schlatter, D. S., DavelosBaines, A.D., Xiao, K., and Kinkel, L. L.  2013.  Resource use of soil Streptomycetes varies with location, phylogeny, and nitrogen amendment.  Microbial Ecology 66: 961-971.

Schmitz, C., Clark, M., Luby, J., Bradeen, J., Guan, Y., Evans, K., Orcheski, B., Brown, S., Verma, S., and Peace, C. 2013. Fruit texture phenotypes of the RosBREED U.S. apple reference germplasm set. HortSci 48:296-303.

Smith, K. P. Budde, A., Dill-Macky, R., Rasmusson, D. C., Schiefelbein, E., Steffenson, B., Wiersma, J. J., Wiersma J. V., and Zhang, B. Registration of 'Quest' spring malting barley with improved resistance to Fusarium head blight. J. Plant Reg. 2013. 7:125–129. doi:10.3198/jpr2012.03.0200crc.

Stanton-Geddes J, Paape T, Epstein B, Briskine R, Yoder, J, Mudge J, Bharti AK, Farmer AD, Zhou P, Denny R, May GD, Erlandson S, Sugawara M, Sadowsky MJ, Young ND, Tiffin P (2013) Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula. PLoS ONE 8(5): e65688. doi:10.1371/journal.pone.0065688.

Stanton-Geddes J, Yoder J, Briskine R, Young ND, Tiffin P (2013) Estimating heritability with whole-genome data. Methods in Ecology and Evolution: doi: 10.1111/2041-210X.12129.

Stoxen, S. M., Mollov, D. S. and Szabo, L. J. First report of Puccinia veronicase-longifoliae on Veronica spicata 'Royal candles' in Minnesota. Plant Dis. Notes 97:285. 2013.

Sugawara M, Epstein B, Badgley B, Unno T, Xu L , Reese J, Gyaneshwar P, Denny R, Mudge J, Bharti AK, Farmer AD, May GD, Woodward JE, Médigue C, Vallenet D, Lajus A, Rouy Z, Martinez-Vaz B, Tiffin P, Young ND, Sadowsky MJ (2013) Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains spanning five genospecies. Genome Biology 14(2):R17. doi:10.1186/gb-2013-14-2-r17.

Szabo, L. J., Mollov, D. S., Rosen, C. First report of garlic rust caused by Puccinia allii on Allium sativum in Minnesota. Plant Dis. Notes 97:285. 2013.

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